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📦 Docker Hub (library) 4 images
🐳
python
:slim
30 tasks
▶
Tasks using this image:
- unique_batch_ids in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- tax_lookup in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- string_split in classify_single pipes/WDL/tasks/tasks_utils.wdl
- tax_lookup in classify_single pipes/WDL/workflows/classify_single.wdl
- meta_sample in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- meta_filename in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- samplesheet_rename_ids in demux_deplete pipes/WDL/tasks/tasks_demux.wdl
- meta_default_sample in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- meta_default_filename in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- biosample_to_table in demux_deplete pipes/WDL/tasks/tasks_ncbi.wdl
- samplesheet_rename_ids in demux_metadata_only pipes/WDL/tasks/tasks_demux.wdl
- biosample_to_table in demux_metadata_only pipes/WDL/tasks/tasks_ncbi.wdl
- string_split in genbank_single pipes/WDL/tasks/tasks_utils.wdl
- biosample_to_genbank in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- biosample_json_to_tsv in genbank_single pipes/WDL/workflows/genbank_single.wdl
- meta_final_csv in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- accessioned_samples in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- group_bams_by_sample in sarscov2_illumina_full pipes/WDL/tasks/tasks_read_utils.wdl
- filter_bad_ntc_batches in sarscov2_illumina_full pipes/WDL/tasks/tasks_assembly.wdl
- ntc_max in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- biosample_to_genbank in sarscov2_illumina_full pipes/WDL/tasks/tasks_ncbi.wdl
- prefix_gisaid in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gisaid_meta_prep in sarscov2_illumina_full pipes/WDL/tasks/tasks_ncbi.wdl
- nextmeta_prep in sarscov2_illumina_full pipes/WDL/tasks/tasks_nextstrain.wdl
- biosample in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- group_sra_bams_by_biosample in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi_tools.wdl
- biosample_to_genbank in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- prefix_gisaid in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
- gisaid_meta_prep in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- tax_lookup in scaffold_and_refine_multitaxa pipes/WDL/workflows/scaffold_and_refine_multitaxa.wdl
🐳
python
:slim Parameterized
7 tasks
▶
Tasks using this image:
- package_genbank_submissions in genbank_gather pipes/WDL/tasks/tasks_ncbi.wdl
- passing_source_modifiers in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- passing_prefix_gisaid in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- passing_gisaid_meta in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_source_modifiers in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_prefix_gisaid in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_gisaid_meta in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
🐳
ubuntu
:latest
27 tasks
▶
Tasks using this image:
- assembly_stats_non_empty in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- assembly_stats_empty in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- fasta_to_ids in augur_from_assemblies pipes/WDL/tasks/tasks_utils.wdl
- concatenate in sarscov2_batch_relineage pipes/WDL/tasks/tasks_utils.wdl
- fasta_to_ids in sarscov2_batch_relineage pipes/WDL/tasks/tasks_utils.wdl
- md5sum in sarscov2_biosample_load pipes/WDL/tasks/tasks_utils.wdl
- upload_complete in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- cumulative_meta_tsv in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- passing_fasta in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- passing_ids in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_fasta in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_ids in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- assembly_meta_tsv in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- samtools_ampliconstats_merge in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- passing_cat_prefilter in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- bed_rename in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- fasta_to_ids in sarscov2_nextstrain pipes/WDL/tasks/tasks_utils.wdl
- fasta_to_ids in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_utils.wdl
- assembly_meta_tsv in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
- submit_genomes in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
- assembly_stats_non_empty in scaffold_and_refine_multitaxa pipes/WDL/workflows/scaffold_and_refine_multitaxa.wdl
- assembly_stats_empty in scaffold_and_refine_multitaxa pipes/WDL/workflows/scaffold_and_refine_multitaxa.wdl
- md5sum in submit_biosample pipes/WDL/tasks/tasks_utils.wdl
- pair_files_by_basename in submit_genbank pipes/WDL/tasks/tasks_utils.wdl
- cat_fasta in subsample_by_metadata_with_focal pipes/WDL/workflows/subsample_by_metadata_with_focal.wdl
- fasta_to_ids in subsample_by_metadata_with_focal pipes/WDL/tasks/tasks_utils.wdl
- cat_except_headers in terra_tsv_to_table pipes/WDL/tasks/tasks_utils.wdl
🐳
~{docker}
:latest
46 tasks
▶
Tasks using this image:
- align_and_count in align_and_count_report pipes/WDL/tasks/tasks_reports.wdl
- align_and_count_summary in align_and_count_multiple_report pipes/WDL/tasks/tasks_reports.wdl
- align_and_count_summary_top_hits in align_and_count_multiple_report pipes/WDL/workflows/align_and_count_multiple_report.wdl
- align_and_count in align_and_count_multiple_report pipes/WDL/tasks/tasks_reports.wdl
- plot_coverage in align_and_plot pipes/WDL/tasks/tasks_reports.wdl
- spikein in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- plot_ref_coverage in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- plot_self_coverage in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- MultiQC in bams_multiqc pipes/WDL/tasks/tasks_reports.wdl
- fastqc in bams_multiqc pipes/WDL/tasks/tasks_reports.wdl
- metag_summary_report in classify_krakenuniq pipes/WDL/workflows/classify_krakenuniq.wdl
- multiqc_raw in classify_multi pipes/WDL/workflows/classify_multi.wdl
- multiqc_cleaned in classify_multi pipes/WDL/workflows/classify_multi.wdl
- multiqc_dedup in classify_multi pipes/WDL/workflows/classify_multi.wdl
- spike_summary in classify_multi pipes/WDL/workflows/classify_multi.wdl
- metag_summary_report in classify_multi pipes/WDL/workflows/classify_multi.wdl
- fastqc_raw in classify_multi pipes/WDL/workflows/classify_multi.wdl
- spikein in classify_multi pipes/WDL/workflows/classify_multi.wdl
- fastqc_cleaned in classify_multi pipes/WDL/workflows/classify_multi.wdl
- spikein in classify_single pipes/WDL/workflows/classify_single.wdl
- multiqc_raw in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- spike_summary in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- spikein in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- multiqc_cleaned in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- MultiQC in demux_only pipes/WDL/tasks/tasks_reports.wdl
- multiqc_raw in demux_plus pipes/WDL/workflows/demux_plus.wdl
- multiqc_cleaned in demux_plus pipes/WDL/workflows/demux_plus.wdl
- spike_summary in demux_plus pipes/WDL/workflows/demux_plus.wdl
- metag_summary_report in demux_plus pipes/WDL/workflows/demux_plus.wdl
- spikein in demux_plus pipes/WDL/workflows/demux_plus.wdl
- tsv_stack in diff_genome_sets pipes/WDL/tasks/tasks_utils.wdl
- isnvs_vcf in isnvs_merge_to_vcf pipes/WDL/tasks/tasks_intrahost.wdl
- isnvs_per_sample in isnvs_one_sample pipes/WDL/tasks/tasks_intrahost.wdl
- aggregate_metagenomics_reports in merge_metagenomics pipes/WDL/tasks/tasks_reports.wdl
- fastqc_raw in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- fastqc_dehosted in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- fastqc_taxfilt in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- spikein in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- MultiQC in multiqc_only pipes/WDL/tasks/tasks_reports.wdl
- merge_coverage_per_position in reconstruct_from_alignments pipes/WDL/tasks/tasks_reports.wdl
- plot_ref_coverage in reconstruct_from_alignments pipes/WDL/workflows/reconstruct_from_alignments.wdl
- assembly_bases in sarscov2_genbank pipes/WDL/tasks/tasks_reports.wdl
- multiqc_raw in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
- spike_summary in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
- fastqc in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_reports.wdl
- spikein in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
📦 andersenlabapps 1 image
🐳
ivar
:1.3.1 Parameterized
1 task
▶
Tasks using this image:
- ivar_trim in assemble_refbased pipes/WDL/tasks/tasks_assembly.wdl
📦 biocontainers 1 image
🐳
krona
:v2.7.1_cv1 Parameterized
1 task
▶
Tasks using this image:
- krona_merge in merge_metagenomics pipes/WDL/tasks/tasks_metagenomics.wdl
📦 broadinstitute 1 image
🐳
horsefish
:pgs_visualizations Parameterized
1 task
▶
Tasks using this image:
- create_viz in CreateEntericsQCVizGeneral pipes/WDL/workflows/create_enterics_qc_viz_general.wdl
📦 cmloreth 1 image
🐳
pathogen-genomics
:test
1 task
▶
Tasks using this image:
- pull_data in genbank_dump pipes/WDL/workflows/sarscov2_genbank_ingest.wdl
📦 docker.io/nextstrain 1 image
🐳
base
:build-20240318T173028Z Parameterized
70 tasks
▶
Tasks using this image:
- export_auspice_json in augur_export_only pipes/WDL/tasks/tasks_nextstrain.wdl
- dedup_seqs in augur_from_assemblies pipes/WDL/workflows/augur_from_assemblies.wdl
- prefilter in augur_from_assemblies pipes/WDL/workflows/augur_from_assemblies.wdl
- augur_mask_sites in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- tip_frequencies in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- augur_import_beast in augur_from_beast_mcc pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in augur_from_beast_mcc pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in augur_from_mltree pipes/WDL/tasks/tasks_nextstrain.wdl
- augur_mask_sites in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- tip_frequencies in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- tip_frequencies in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- augur_mask_sites in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- filter in filter_sequences pipes/WDL/workflows/filter_sequences.wdl
- draft_augur_tree in mafft_and_snp pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in mafft_and_snp_annotated pipes/WDL/tasks/tasks_nextstrain.wdl
- sanitize_gisaid in sarscov2_gisaid_ingest pipes/WDL/workflows/sarscov2_gisaid_ingest.wdl
- nextstrain_ncov_defaults in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- dedup_seqs in sarscov2_nextstrain pipes/WDL/workflows/sarscov2_nextstrain.wdl
- subsample in sarscov2_nextstrain pipes/WDL/workflows/sarscov2_nextstrain.wdl
- augur_mask_sites in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- tip_frequencies in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- nextstrain_ncov_defaults in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- dedup_seqs in sarscov2_nextstrain_aligned_input pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl
- subsample in sarscov2_nextstrain_aligned_input pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl
- augur_mask_sites in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- draft_augur_tree in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- refine_augur_tree in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- tip_frequencies in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_tree in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- translate_augur_tree in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- assign_clades_to_nodes in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- export_auspice_json in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- ancestral_traits in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- filter_subsample_sequences in subsample_by_metadata pipes/WDL/tasks/tasks_nextstrain.wdl
- prefilter in subsample_by_metadata_with_focal pipes/WDL/workflows/subsample_by_metadata_with_focal.wdl
- subsample_focal in subsample_by_metadata_with_focal pipes/WDL/workflows/subsample_by_metadata_with_focal.wdl
- subsample_global in subsample_by_metadata_with_focal pipes/WDL/workflows/subsample_by_metadata_with_focal.wdl
📦 ghcr.io/broadinstitute 1 image
🐳
reconstructr
:main Parameterized
1 task
▶
Tasks using this image:
- reconstructr in reconstruct_from_alignments pipes/WDL/tasks/tasks_interhost.wdl
📦 mirror.gcr.io/staphb 1 image
🐳
vadr
:1.6.4 Parameterized
4 tasks
▶
Tasks using this image:
- vadr in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- vadr in sarscov2_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- vadr in sarscov2_illumina_full pipes/WDL/tasks/tasks_ncbi.wdl
- vadr in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi.wdl
📦 nextstrain 1 image
🐳
nextclade
:3.18.0 Parameterized
4 tasks
▶
Tasks using this image:
- nextclade_one_sample in nextclade_single pipes/WDL/tasks/tasks_nextstrain.wdl
- nextclade_many_samples in sarscov2_batch_relineage pipes/WDL/tasks/tasks_nextstrain.wdl
- nextclade_one_sample in sarscov2_lineages pipes/WDL/tasks/tasks_nextstrain.wdl
- nextclade_many_samples in sarscov2_nextclade_multi pipes/WDL/tasks/tasks_nextstrain.wdl
📦 quay.io/biocontainers 2 images
🐳
snp-sites
:2.5.1--hed695b0_0 Parameterized
5 tasks
▶
Tasks using this image:
- snp_sites in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- snp_sites in mafft_and_snp pipes/WDL/tasks/tasks_nextstrain.wdl
- snp_sites in mafft_and_snp_annotated pipes/WDL/tasks/tasks_nextstrain.wdl
- snp_sites in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- snp_sites in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
🐳
trimal
:1.4.1--h6bb024c_3 Parameterized
2 tasks
▶
Tasks using this image:
- trimal in mafft_and_trim pipes/WDL/workflows/mafft_and_trim.wdl
- trimal_clean_msa in trimal pipes/WDL/tasks/tasks_interhost.wdl
📦 quay.io/broadinstitute 17 images
🐳
beast-beagle-cuda
:1.10.5pre Parameterized
1 task
▶
Tasks using this image:
- beast in beast_gpu pipes/WDL/tasks/tasks_interhost.wdl
🐳
gisaid-cli
:3.0
1 task
▶
Tasks using this image:
- gisaid_uploader in sarscov2_data_release pipes/WDL/tasks/tasks_sarscov2.wdl
🐳
ncbi-tools
:2.11.1 Parameterized
13 tasks
▶
Tasks using this image:
- Fetch_SRA_to_BAM in fetch_sra_to_bam pipes/WDL/tasks/tasks_ncbi_tools.wdl
- fetch_biosamples in genbank_single pipes/WDL/tasks/tasks_ncbi_tools.wdl
- biosample_tsv_filter_preexisting in sarscov2_biosample_load pipes/WDL/tasks/tasks_ncbi_tools.wdl
- biosample_submit_tsv_ftp_upload in sarscov2_biosample_load pipes/WDL/tasks/tasks_ncbi_tools.wdl
- genbank_upload in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- sra_tsv_to_xml in sarscov2_data_release pipes/WDL/tasks/tasks_ncbi_tools.wdl
- sra_upload in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- Fetch_SRA_to_BAM in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi_tools.wdl
- biosample_tsv_filter_preexisting in submit_biosample pipes/WDL/tasks/tasks_ncbi_tools.wdl
- biosample_submit_tsv_ftp_upload in submit_biosample pipes/WDL/tasks/tasks_ncbi_tools.wdl
- genbank_upload in submit_genbank pipes/WDL/workflows/submit_genbank.wdl
- sra_tsv_to_xml in submit_sra pipes/WDL/tasks/tasks_ncbi_tools.wdl
- sra_upload in submit_sra pipes/WDL/workflows/submit_sra.wdl
🐳
polyphonia
:latest Parameterized
2 tasks
▶
Tasks using this image:
- detect_cross_contam in detect_cross_contamination pipes/WDL/workflows/detect_cross_contamination.wdl
- detect_cross_contam in detect_cross_contamination_precalled_vcfs pipes/WDL/workflows/detect_cross_contamination_precalled_vcfs.wdl
🐳
py3-bio
:0.1.2 Parameterized
6 tasks
▶
Tasks using this image:
- revcomp_i5 in demux_deplete pipes/WDL/tasks/tasks_demux.wdl
- crsp_meta_etl in sarscov2_biosample_load pipes/WDL/tasks/tasks_sarscov2.wdl
- meta_sanitize in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- generate_author_sbt in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- ivar_trim_stats in sarscov2_illumina_full pipes/WDL/tasks/tasks_assembly.wdl
- sc2_meta_final in sarscov2_illumina_full pipes/WDL/tasks/tasks_sarscov2.wdl
🐳
qiime2
:latest Parameterized
6 tasks
▶
Tasks using this image:
- qiime_import_from_bam in qiime_import_bam pipes/WDL/tasks/tasks_16S_amplicon.wdl
- qiime_import_from_bam in amplicon16S_analysis pipes/WDL/tasks/tasks_16S_amplicon.wdl
- trim_reads in amplicon16S_analysis pipes/WDL/tasks/tasks_16S_amplicon.wdl
- join_paired_ends in amplicon16S_analysis pipes/WDL/tasks/tasks_16S_amplicon.wdl
- deblur in amplicon16S_analysis pipes/WDL/tasks/tasks_16S_amplicon.wdl
- tax_analysis in amplicon16S_analysis pipes/WDL/tasks/tasks_16S_amplicon.wdl
🐳
sc2-rmd
:0.1.25 Parameterized
2 tasks
▶
Tasks using this image:
- sequencing_report in sarscov2_illumina_full pipes/WDL/tasks/tasks_sarscov2.wdl
- sequencing_report in sarscov2_sequencing_reports pipes/WDL/tasks/tasks_sarscov2.wdl
🐳
subsampler
:latest Parameterized
2 tasks
▶
Tasks using this image:
- subsample_by_cases in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_interhost.wdl
- subsample_by_cases in subsampler_only pipes/WDL/tasks/tasks_interhost.wdl
🐳
viral-assemble
:2.5.1.0 Parameterized
18 tasks
▶
Tasks using this image:
- assemble in assemble_denovo pipes/WDL/tasks/tasks_assembly.wdl
- scaffold in assemble_denovo pipes/WDL/tasks/tasks_assembly.wdl
- spades in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- select_references in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_assembly.wdl
- scaffold in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_assembly.wdl
- call_consensus in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- trim_rmdup_subsamp in megablast pipes/WDL/tasks/tasks_megablast.wdl
- spades in classify_multi pipes/WDL/workflows/classify_multi.wdl
- spades in classify_single pipes/WDL/workflows/classify_single.wdl
- select_references in classify_single pipes/WDL/tasks/tasks_assembly.wdl
- spades in demux_plus pipes/WDL/workflows/demux_plus.wdl
- compare_two_genomes in diff_genome_sets pipes/WDL/tasks/tasks_reports.wdl
- assemble in metagenomic_denovo pipes/WDL/tasks/tasks_assembly.wdl
- scaffold in metagenomic_denovo pipes/WDL/tasks/tasks_assembly.wdl
- scaffold in scaffold_and_refine pipes/WDL/tasks/tasks_assembly.wdl
- select_references in scaffold_and_refine_multitaxa pipes/WDL/tasks/tasks_assembly.wdl
- scaffold in scaffold_and_refine_multitaxa pipes/WDL/tasks/tasks_assembly.wdl
- simulate_reads in simulate_illumina_reads pipes/WDL/workflows/simulate_illumina_reads.wdl
🐳
viral-baseimage
:0.3.0
13 tasks
▶
Tasks using this image:
- tar_extract in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_utils.wdl
- today in sarscov2_batch_relineage pipes/WDL/tasks/tasks_utils.wdl
- dashboard_delivery in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- gcs_reporting_dump in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- today in sarscov2_data_release pipes/WDL/tasks/tasks_utils.wdl
- s3_cdc_dump_meta in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- s3_cdc_dump_reads in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- s3_cdc_complete in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- s3_cdc_dump_cumulative in sarscov2_data_release pipes/WDL/workflows/sarscov2_data_release.wdl
- gcs_dump in sarscov2_gisaid_ingest pipes/WDL/workflows/sarscov2_gisaid_ingest.wdl
- today in sarscov2_sequencing_reports pipes/WDL/tasks/tasks_utils.wdl
- tar_extract in scaffold_and_refine_multitaxa pipes/WDL/tasks/tasks_utils.wdl
- gcs_sra_dump_reads in submit_sra pipes/WDL/workflows/submit_sra.wdl
🐳
viral-baseimage
:0.3.0 Parameterized
9 tasks
▶
Tasks using this image:
- passing_package_genbank in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_package_genbank in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- package_genbank_ftp_submission in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gcs_metrics_dump in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gcs_cdc_dump in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gcs_cdc_dump_reads in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gcs_sra_dump_reads in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- gcs_sra_dump in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- package_genbank_ftp_submission in sarscov2_sra_to_genbank pipes/WDL/workflows/sarscov2_sra_to_genbank.wdl
🐳
viral-classify
:2.5.1.0 Parameterized
28 tasks
▶
Tasks using this image:
- deplete_taxa in assemble_denovo pipes/WDL/tasks/tasks_taxon_filter.wdl
- filter_to_taxon in assemble_denovo pipes/WDL/tasks/tasks_taxon_filter.wdl
- kraken2 in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_metagenomics.wdl
- deplete in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- filter_acellular in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- report_primary_kraken_taxa in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_metagenomics.wdl
- kaiju in classify_kaiju pipes/WDL/tasks/tasks_metagenomics.wdl
- kraken2 in classify_kraken2 pipes/WDL/tasks/tasks_metagenomics.wdl
- krona_merge_kraken2 in classify_multi pipes/WDL/workflows/classify_multi.wdl
- kraken2 in classify_multi pipes/WDL/tasks/tasks_metagenomics.wdl
- deplete in classify_multi pipes/WDL/workflows/classify_multi.wdl
- filter_acellular in classify_multi pipes/WDL/workflows/classify_multi.wdl
- kraken2 in classify_single pipes/WDL/tasks/tasks_metagenomics.wdl
- deplete in classify_single pipes/WDL/workflows/classify_single.wdl
- filter_acellular in classify_single pipes/WDL/workflows/classify_single.wdl
- report_primary_kraken_taxa in classify_single pipes/WDL/tasks/tasks_metagenomics.wdl
- deplete in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- deplete in demux_plus pipes/WDL/workflows/demux_plus.wdl
- deplete_taxa in deplete_only pipes/WDL/tasks/tasks_taxon_filter.wdl
- filter_bam_to_taxa in filter_classified_bam_to_taxa pipes/WDL/tasks/tasks_metagenomics.wdl
- genbank_special_taxa in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- build_kraken2_db in kraken2_build pipes/WDL/tasks/tasks_metagenomics.wdl
- kraken2 in metagenomic_denovo pipes/WDL/tasks/tasks_metagenomics.wdl
- deplete_k2 in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- filter_acellular in metagenomic_denovo pipes/WDL/workflows/metagenomic_denovo.wdl
- deplete_taxa in metagenomic_denovo pipes/WDL/tasks/tasks_taxon_filter.wdl
- filter_to_taxon in metagenomic_denovo pipes/WDL/tasks/tasks_taxon_filter.wdl
- taxid_to_nextclade_dataset_name in nextclade_single pipes/WDL/tasks/tasks_nextstrain.wdl
🐳
viral-classify
:fn_blast Parameterized
2 tasks
▶
Tasks using this image:
- blastoff in megablast pipes/WDL/tasks/tasks_megablast.wdl
- ChunkBlastHits in chunk_megablast pipes/WDL/tasks/tasks_megablast.wdl
🐳
viral-classify
:2.2.4.0 Parameterized
2 tasks
▶
Tasks using this image:
- krakenuniq in classify_krakenuniq pipes/WDL/tasks/tasks_metagenomics.wdl
- krakenuniq in demux_plus pipes/WDL/tasks/tasks_metagenomics.wdl
🐳
viral-core
:2.5.1 Parameterized
60 tasks
▶
Tasks using this image:
- align in align_and_plot pipes/WDL/workflows/align_and_plot.wdl
- merge_dedup_reads in assemble_denovo pipes/WDL/workflows/assemble_denovo.wdl
- merge_cleaned_reads in assemble_denovo pipes/WDL/workflows/assemble_denovo.wdl
- merge_taxfilt_reads in assemble_denovo pipes/WDL/workflows/assemble_denovo.wdl
- rmdup_ubam in assemble_denovo pipes/WDL/tasks/tasks_read_utils.wdl
- rename_fasta_header in assemble_denovo pipes/WDL/tasks/tasks_ncbi.wdl
- renamed_reads in assemble_denovo pipes/WDL/workflows/assemble_denovo.wdl
- merge_raw_reads in assemble_denovo_metagenomic pipes/WDL/workflows/assemble_denovo_metagenomic.wdl
- rmdup_ubam in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_read_utils.wdl
- alignment_metrics in assemble_refbased pipes/WDL/tasks/tasks_reports.wdl
- run_discordance in assemble_refbased pipes/WDL/tasks/tasks_assembly.wdl
- align_to_ref in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- merge_align_to_ref in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- align_to_self in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- merge_align_to_self in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- filter_sequences_to_list in augur_from_msa pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in augur_from_msa pipes/WDL/tasks/tasks_utils.wdl
- filter_sequences_to_list in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in augur_from_msa_with_subsampler pipes/WDL/tasks/tasks_utils.wdl
- depth in calc_bam_read_depths pipes/WDL/workflows/calc_bam_read_depths.wdl
- rmdup_ubam in classify_multi pipes/WDL/tasks/tasks_read_utils.wdl
- merge_raw_reads in classify_single pipes/WDL/workflows/classify_single.wdl
- rmdup_ubam in classify_single pipes/WDL/tasks/tasks_read_utils.wdl
- coverage_report in coverage_table pipes/WDL/tasks/tasks_reports.wdl
- illumina_demux in demux_deplete pipes/WDL/tasks/tasks_demux.wdl
- check_terra_env in demux_deplete pipes/WDL/tasks/tasks_terra.wdl
- sra_meta_prep in demux_deplete pipes/WDL/tasks/tasks_ncbi.wdl
- create_or_update_sample_tables in demux_deplete pipes/WDL/tasks/tasks_terra.wdl
- biosample_map_tsv_join in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- check_terra_env in demux_metadata_only pipes/WDL/tasks/tasks_terra.wdl
- sra_meta_prep in demux_metadata_only pipes/WDL/tasks/tasks_ncbi.wdl
- create_or_update_sample_tables in demux_metadata_only pipes/WDL/tasks/tasks_terra.wdl
- biosample_map_tsv_join in demux_metadata_only pipes/WDL/workflows/demux_metadata_only.wdl
- illumina_demux in demux_only pipes/WDL/tasks/tasks_demux.wdl
- illumina_demux in demux_plus pipes/WDL/tasks/tasks_demux.wdl
- depth in detect_cross_contamination pipes/WDL/workflows/detect_cross_contamination.wdl
- downsample_bams in downsample pipes/WDL/tasks/tasks_read_utils.wdl
- check_terra_env in dump_gcloud_env_info pipes/WDL/tasks/tasks_terra.wdl
- FastqToUBAM in fastq_to_ubam pipes/WDL/tasks/tasks_read_utils.wdl
- check_terra_env in fetch_sra_to_bam pipes/WDL/tasks/tasks_terra.wdl
- structured_comments_from_aligned_bam in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- merge_and_reheader_bams in merge_bams pipes/WDL/tasks/tasks_read_utils.wdl
- merge_tarballs in merge_tar_chunks pipes/WDL/tasks/tasks_demux.wdl
- FastqToUBAM in metagenomic_denovo pipes/WDL/tasks/tasks_read_utils.wdl
- rmdup_ubam in metagenomic_denovo pipes/WDL/tasks/tasks_read_utils.wdl
- check_terra_env in populate_library_and_sample_tables_from_flowcell pipes/WDL/tasks/tasks_terra.wdl
- create_or_update_sample_tables in populate_library_and_sample_tables_from_flowcell pipes/WDL/tasks/tasks_terra.wdl
- filter_sequences_by_length in sarscov2_batch_relineage pipes/WDL/tasks/tasks_utils.wdl
- merge_raw in sarscov2_batch_relineage pipes/WDL/workflows/sarscov2_batch_relineage.wdl
- merge_annotated in sarscov2_batch_relineage pipes/WDL/workflows/sarscov2_batch_relineage.wdl
- passing_structured_cmt in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- weird_structured_cmt in sarscov2_genbank pipes/WDL/workflows/sarscov2_genbank.wdl
- rename_fasta_header in sarscov2_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- structured_comments in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- rename_fasta_header in sarscov2_sra_to_genbank pipes/WDL/tasks/tasks_ncbi.wdl
- derived_cols in subsample_by_metadata_with_focal pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in subsample_by_metadata_with_focal pipes/WDL/tasks/tasks_utils.wdl
- check_terra_env in terra_tsv_to_table pipes/WDL/tasks/tasks_terra.wdl
- check_terra_env in unpack_archive_to_bucket pipes/WDL/tasks/tasks_terra.wdl
- unpack_archive_to_bucket_path in unpack_archive_to_bucket pipes/WDL/tasks/tasks_utils.wdl
🐳
viral-core
:2.5.1
30 tasks
▶
Tasks using this image:
- zcat in augur_from_assemblies pipes/WDL/tasks/tasks_utils.wdl
- filter_sequences_by_length in augur_from_assemblies pipes/WDL/tasks/tasks_utils.wdl
- derived_cols in augur_from_assemblies pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in augur_from_assemblies pipes/WDL/tasks/tasks_utils.wdl
- zcat in mafft_and_snp pipes/WDL/tasks/tasks_utils.wdl
- filter_sequences_by_length in mafft_and_snp pipes/WDL/tasks/tasks_utils.wdl
- zcat in mafft_and_snp_annotated pipes/WDL/tasks/tasks_utils.wdl
- filter_sequences_by_length in mafft_and_snp_annotated pipes/WDL/tasks/tasks_utils.wdl
- zcat in reconstruct_from_alignments pipes/WDL/tasks/tasks_utils.wdl
- get_bam_samplename in reconstruct_from_alignments pipes/WDL/tasks/tasks_read_utils.wdl
- tsv_join in sarscov2_biosample_load pipes/WDL/tasks/tasks_utils.wdl
- biosample_merge in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- picard_wgs_merge in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- picard_alignment_merge in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- picard_insertsize_merge in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- passing_ntc in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- passing_cat in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- submittable_filter in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- structured_comments in sarscov2_illumina_full pipes/WDL/tasks/tasks_ncbi.wdl
- submit_genomes in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- rename_fasta_header in sarscov2_illumina_full pipes/WDL/tasks/tasks_ncbi.wdl
- zcat in sarscov2_nextstrain pipes/WDL/tasks/tasks_utils.wdl
- filter_sequences_by_length in sarscov2_nextstrain pipes/WDL/tasks/tasks_utils.wdl
- derived_cols in sarscov2_nextstrain pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in sarscov2_nextstrain pipes/WDL/tasks/tasks_utils.wdl
- zcat in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_utils.wdl
- derived_cols in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_nextstrain.wdl
- tsv_join in sarscov2_nextstrain_aligned_input pipes/WDL/tasks/tasks_utils.wdl
- tsv_join in sarscov2_sequencing_reports pipes/WDL/tasks/tasks_utils.wdl
- tsv_join in submit_biosample pipes/WDL/tasks/tasks_utils.wdl
🐳
viral-phylo
:2.5.1.0 Parameterized
25 tasks
▶
Tasks using this image:
- download_ref_genomes_from_tsv in assemble_denovo_metagenomic pipes/WDL/tasks/tasks_ncbi.wdl
- isnvs_ref in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- isnvs_self in assemble_refbased pipes/WDL/workflows/assemble_refbased.wdl
- mafft in augur_from_assemblies pipes/WDL/workflows/augur_from_assemblies.wdl
- download_annotations in classify_single pipes/WDL/tasks/tasks_ncbi.wdl
- lofreq in detect_cross_contamination pipes/WDL/tasks/tasks_intrahost.wdl
- download_annotations in fetch_annotations pipes/WDL/tasks/tasks_ncbi.wdl
- download_annotations in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- annot in genbank_single pipes/WDL/workflows/genbank_single.wdl
- table2asn in genbank_single pipes/WDL/tasks/tasks_ncbi.wdl
- lofreq in isnvs_lofreq pipes/WDL/tasks/tasks_intrahost.wdl
- mafft in isnvs_merge_to_vcf pipes/WDL/workflows/isnvs_merge_to_vcf.wdl
- multi_align_mafft_ref in mafft pipes/WDL/tasks/tasks_interhost.wdl
- mafft in mafft_and_snp pipes/WDL/workflows/mafft_and_snp.wdl
- mafft in mafft_and_snp_annotated pipes/WDL/workflows/mafft_and_snp_annotated.wdl
- annotate_vcf in mafft_and_snp_annotated pipes/WDL/workflows/mafft_and_snp_annotated.wdl
- mafft in mafft_and_trim pipes/WDL/workflows/mafft_and_trim.wdl
- merge_vcfs_gatk in merge_vcfs pipes/WDL/tasks/tasks_interhost.wdl
- merge_vcfs in merge_vcfs_and_annotate pipes/WDL/workflows/merge_vcfs_and_annotate.wdl
- annotate_vcf in merge_vcfs_and_annotate pipes/WDL/workflows/merge_vcfs_and_annotate.wdl
- mafft in reconstruct_from_alignments pipes/WDL/workflows/reconstruct_from_alignments.wdl
- isnvs_ref in reconstruct_from_alignments pipes/WDL/workflows/reconstruct_from_alignments.wdl
- mafft in sarscov2_nextstrain pipes/WDL/workflows/sarscov2_nextstrain.wdl
- download_ref_genomes_from_tsv in scaffold_and_refine_multitaxa pipes/WDL/tasks/tasks_ncbi.wdl
- download_fasta_from_accession_string in simulate_illumina_reads pipes/WDL/tasks/tasks_ncbi.wdl
📦 quay.io/staphb 1 image
🐳
pangolin
:4.3.3-pdata-1.36 Parameterized
2 tasks
▶
Tasks using this image:
- pangolin_many_samples in sarscov2_batch_relineage pipes/WDL/tasks/tasks_sarscov2.wdl
- pangolin_one_sample in sarscov2_lineages pipes/WDL/tasks/tasks_sarscov2.wdl
📦 schaluvadi 1 image
🐳
pathogen-genomic-surveillance
:api-wdl Parameterized
7 tasks
▶
Tasks using this image:
- terra_load_biosample_data in demux_deplete pipes/WDL/workflows/demux_deplete.wdl
- terra_load_biosample_data in demux_metadata_only pipes/WDL/workflows/demux_metadata_only.wdl
- data_tables in sarscov2_illumina_full pipes/WDL/workflows/sarscov2_illumina_full.wdl
- download_entities_tsv in sarscov2_illumina_full pipes/WDL/tasks/tasks_terra.wdl
- download_entities_tsv in terra_table_to_tsv pipes/WDL/tasks/tasks_terra.wdl
- upload_entities_tsv in terra_tsv_to_table pipes/WDL/tasks/tasks_terra.wdl
- upload_reads_assemblies_entities_tsv in update_data_tables pipes/WDL/tasks/tasks_terra.wdl
📦 us-central1-docker.pkg.dev/pgs-automation/enterics-visualizations 1 image
🐳
create_visualization_html
:v6 Parameterized
1 task
▶
Tasks using this image:
- create_viz in CreateEntericsQCViz pipes/WDL/workflows/create_enterics_qc_viz.wdl
📦 Parameterized Images 1 image
🐳
docker
Parameterized
1 task
▶
Tasks using this image:
- assembly_fsa in genbank_single pipes/WDL/workflows/genbank_single.wdl