terra_table_to_tsv

WORKFLOW terra_table_to_tsv

File Path	`pipes/WDL/workflows/terra_table_to_tsv.wdl`
WDL Version	1.0
Type	workflow

Imports

Namespace	Path
`terra`	`../tasks/tasks_terra.wdl`

Workflow: terra_table_to_tsv

Download data table in Terra workspace to tsv file.

Author: Broad Viral Genomics

viral-ngs@broadinstitute.org

Inputs

Name	Type	Description	Default
`terra_project`	`String`	-	-
`workspace_name`	`String`	-	-
`table_name`	`String`	-	-
`nop_input_string`	`String?`	-	-
2 optional inputs with default values
`outname`	`String`	-	"~{terra_project}-~{workspace_name}-~{table_name}.tsv"
`docker`	`String`	-	"schaluvadi/pathogen-genomic-surveillance:api-wdl"

Outputs

Name	Type	Expression
`tsv_file`	`File`	`download_entities_tsv.tsv_file`

Calls

This workflow calls the following tasks or subworkflows:

CALL TASKS `download_entities_tsv` ↗

No explicit input mappings

Images

Container images used by tasks in this workflow:

🐳 Parameterized Image

⚙️ Parameterized

Configured via input:
docker

Used by 1 task:

download_entities_tsv

← Back to Index

flowchart TD
    Start([terra_table_to_tsv])
    N1["download_entities_tsv"]
    Start --> N1
    N1 --> End([End])
    classDef taskNode fill:#a371f7,stroke:#8b5cf6,stroke-width:2px,color:#fff
    classDef workflowNode fill:#58a6ff,stroke:#1f6feb,stroke-width:2px,color:#fff

version 1.0

#DX_SKIP_WORKFLOW

import "../tasks/tasks_terra.wdl" as terra

workflow terra_table_to_tsv {
    meta {
        description: "Download data table in Terra workspace to tsv file."
        author: "Broad Viral Genomics"
        email:  "viral-ngs@broadinstitute.org"
    }

    call terra.download_entities_tsv

    output {
        File tsv_file = download_entities_tsv.tsv_file
    }
}