Inputs & Outputs

Retrieve the submitted inputs or generated outputs of a workflow.

Quick Start

InputsOutputs

pumbaa workflow inputs <workflow-id>

Aliases: pumbaa wf i, pumbaa wf in

pumbaa workflow outputs <workflow-id>

Aliases: pumbaa wf o, pumbaa wf out

Flags

Flag	Alias	Description
--json	-j	Output as JSON instead of a table

Examples

Inspect inputsPipe outputs to a scriptReuse inputs for a new submission

pumbaa workflow inputs abc-123

Human-readable key-value listing (the workflow name prefix is stripped for readability).

pumbaa workflow outputs abc-123 --json | jq -r '.["pipeline.final_vcf"]'

pumbaa workflow inputs abc-123 --json > inputs.json
# edit inputs.json, then:
pumbaa workflow submit --workflow pipeline.wdl --inputs inputs.json

See Also

• Submit — Resubmit with modified inputs
• Metadata — Status, timing, and calls
• Diff — Compare inputs between two runs